Wrapper functions

clean_coordinates()

Geographic Cleaning of Coordinates from Biologic Collections

clean_dataset()

Coordinate Cleaning using Dataset Properties

clean_fossils()

Geographic and Temporal Cleaning of Records from Fossil Collections

Geographic coordinate cleaning

cc_aohi()

Identify Coordinates in Artificial Hotspot Occurrence Inventory

cc_cap()

Identify Coordinates in Vicinity of Country Capitals.

cc_cen()

Identify Coordinates in Vicinity of Country and Province Centroids

cc_coun()

Identify Coordinates Outside their Reported Country

cc_dupl()

Identify Duplicated Records

cc_equ()

Identify Records with Identical lat/lon

cc_gbif()

Identify Records Assigned to GBIF Headquarters

cc_inst()

Identify Records in the Vicinity of Biodiversity Institutions

cc_iucn()

Identify Records Outside Natural Ranges

cc_outl()

Identify Geographic Outliers in Species Distributions

cc_sea()

Identify Non-terrestrial Coordinates

cc_urb()

Identify Records Inside Urban Areas

cc_val()

Identify Invalid lat/lon Coordinates

cc_zero()

Identify Zero Coordinates

Dataset-levelcleaning

cd_ddmm()

Identify Datasets with a Degree Conversion Error

cd_round()

Identify Datasets with Rasterized Coordinates

Fossil cleaning

cf_age()

Identify Fossils with Outlier Age

cf_equal()

Identify Fossils with equal min and max age

cf_outl()

Identify Outlier Records in Space and Time

cf_range()

Identify Fossils with Extreme Age Ranges

write_pyrate()

Create Input Files for PyRate

Data

buffland

Global Coastlines buffered by 1 degree

buffsea

Global Coastlines buffered by -1 degree

countryref

Country Centroids and Country Capitals

institutions

Global Locations of Biodiversity Institutions

pbdb_example

Example data from the Paleobiologydatabase

aohi

Artificial Hotspot Occurrence Inventory

Visualization

plot(<spatialvalid>)

Plot Method for Class Spatialvalid

Check

is.spatialvalid()

Check spatialvalid object