Checks if given txid is represented by any of the sequences of a cluster by searching through all the sequence search organism lineages.

is_txid_in_clstr(phylota, txid, cid)

Arguments

phylota

Phylota

txid

Taxonomic ID

cid

Cluster ID

Value

boolean

See also

Examples

data(tinamous) cid <- tinamous@cids[[1]] clstr <- tinamous[[cid]] sq <- tinamous[[clstr@sids[[1]]]] txid <- sq@txid # expect true is_txid_in_clstr(phylota = tinamous, txid = txid, cid = cid)
#> [1] TRUE