Given a sequence object, this function will generate a list of cluster objects using BLAST

clstr_sqs(txid, sqs, ps, lvl, typ = c("direct", "subtree", "paraphyly"))

Arguments

txid

Taxonomic ID

sqs

Sequence object of sequences to be BLASTed

ps

Parameters list, generated with parameters()

lvl

Integer, number of message indentations indicating code depth.

typ

Direct, subtree or paraphyly?

See also