Identifies all direct and subtree clusters for a taxonomic ID.

clstr_all(txid, sqs, txdct, ps, lvl = 0)

Arguments

txid

Taxonomic ID

sqs

Sequence object of all downloaded sequences

txdct

Taxonomic dictionary

ps

Parameters list, generated with parameters()

lvl

Integer, number of message indentations indicating code depth.

Value

ClstrArc

See also