Multiple cluster records.

# S4 method for ClstrArc
as.character(x)

# S4 method for ClstrArc
show(object)

# S4 method for ClstrArc
print(x)

# S4 method for ClstrArc
str(object, max.level = 2L, ...)

# S4 method for ClstrArc
summary(object)

# S4 method for ClstrArc,character
[[(x, i)

# S4 method for ClstrArc,character,missing,missing
[(x, i, j, ...,
  drop = TRUE)

Arguments

x

ClstrArc object

object

ClstrArc object

max.level

Maximum level of nesting for str()

...

Further arguments for str()

i

cid(s)

j

Unused

drop

Unused

Slots

ids

Vector of cluster record IDs

clstrs

List of ClstrArc named by ID

See also

Examples

data('aotus') clstrarc <- aotus@clstrs # this is a ClstrArc object # it contains cluster records show(clstrarc)
#> Archive of cluster record(s) #> - [193] clusters
# you can access its different data slots with @ clstrarc@ids # unique cluster ID
#> [1] "0" "1" "2" "3" "4" "5" "6" "7" "8" "9" "10" "11" #> [13] "12" "13" "14" "15" "16" "17" "18" "19" "20" "21" "22" "23" #> [25] "24" "25" "26" "27" "28" "29" "30" "31" "32" "33" "34" "35" #> [37] "36" "37" "38" "39" "40" "41" "42" "43" "44" "45" "46" "47" #> [49] "48" "49" "50" "51" "52" "53" "54" "55" "56" "57" "58" "59" #> [61] "60" "61" "62" "63" "64" "65" "66" "67" "68" "69" "70" "71" #> [73] "72" "73" "74" "75" "76" "77" "78" "79" "80" "81" "82" "83" #> [85] "84" "85" "86" "87" "88" "89" "90" "91" "92" "93" "94" "95" #> [97] "96" "97" "98" "99" "100" "101" "102" "103" "104" "105" "106" "107" #> [109] "108" "109" "110" "111" "112" "113" "114" "115" "116" "117" "118" "119" #> [121] "120" "121" "122" "123" "124" "125" "126" "127" "128" "129" "130" "131" #> [133] "132" "133" "134" "135" "136" "137" "138" "139" "140" "141" "142" "143" #> [145] "144" "145" "146" "147" "148" "149" "150" "151" "152" "153" "154" "155" #> [157] "156" "157" "158" "159" "160" "161" "162" "163" "164" "165" "166" "167" #> [169] "168" "169" "170" "171" "172" "173" "174" "175" "176" "177" "178" "179" #> [181] "180" "181" "182" "183" "184" "185" "186" "187" "188" "189" "190" "191" #> [193] "192"
clstrarc@clstrs # list of cluster records
#> $`0` #> Cluster Record [id 0] #> - [subtree] type #> - [AF129794.1] seed sequence #> - [204] sequences #> - [5] taxa #> #> $`1` #> Cluster Record [id 1] #> - [subtree] type #> - [U52114.1] seed sequence #> - [63] sequences #> - [5] taxa #> #> $`2` #> Cluster Record [id 2] #> - [subtree] type #> - [DI178118.1] seed sequence #> - [52] sequences #> - [2] taxa #> #> $`3` #> Cluster Record [id 3] #> - [subtree] type #> - [JQ932794.1] seed sequence #> - [43] sequences #> - [4] taxa #> #> $`4` #> Cluster Record [id 4] #> - [subtree] type #> - [U36844.1] seed sequence #> - [41] sequences #> - [9] taxa #> #> $`5` #> Cluster Record [id 5] #> - [subtree] type #> - [KF014117.1/1..1263] seed sequence #> - [35] sequences #> - [1] taxa #> #> $`6` #> Cluster Record [id 6] #> - [subtree] type #> - [LC075891.1] seed sequence #> - [33] sequences #> - [2] taxa #> #> $`7` #> Cluster Record [id 7] #> - [subtree] type #> - [JN161069.1] seed sequence #> - [30] sequences #> - [1] taxa #> #> $`8` #> Cluster Record [id 8] #> - [subtree] type #> - [JN161069.1] seed sequence #> - [30] sequences #> - [1] taxa #> #> $`9` #> Cluster Record [id 9] #> - [subtree] type #> - [AJ489745.1] seed sequence #> - [29] sequences #> - [10] taxa #> #> $`10` #> Cluster Record [id 10] #> - [subtree] type #> - [AF333711.1] seed sequence #> - [28] sequences #> - [1] taxa #> #> $`11` #> Cluster Record [id 11] #> - [direct] type #> - [LC075891.1] seed sequence #> - [26] sequences #> - [1] taxa #> #> $`12` #> Cluster Record [id 12] #> - [subtree] type #> - [JQ932884.1] seed sequence #> - [24] sequences #> - [4] taxa #> #> $`13` #> Cluster Record [id 13] #> - [subtree] type #> - [AF378747.1] seed sequence #> - [20] sequences #> - [1] taxa #> #> $`14` #> Cluster Record [id 14] #> - [subtree] type #> - [JQ932881.1] seed sequence #> - [19] sequences #> - [4] taxa #> #> $`15` #> Cluster Record [id 15] #> - [subtree] type #> - [AY900546.1] seed sequence #> - [19] sequences #> - [1] taxa #> #> $`16` #> Cluster Record [id 16] #> - [subtree] type #> - [JQ932999.1] seed sequence #> - [18] sequences #> - [1] taxa #> #> $`17` #> Cluster Record [id 17] #> - [subtree] type #> - [AF027542.1] seed sequence #> - [18] sequences #> - [1] taxa #> #> $`18` #> Cluster Record [id 18] #> - [subtree] type #> - [AF333712.1] seed sequence #> - [18] sequences #> - [1] taxa #> #> $`19` #> Cluster Record [id 19] #> - [subtree] type #> - [JQ932845.1] seed sequence #> - [17] sequences #> - [4] taxa #> #> $`20` #> Cluster Record [id 20] #> - [subtree] type #> - [JQ933027.1] seed sequence #> - [16] sequences #> - [2] taxa #> #> $`21` #> Cluster Record [id 21] #> - [subtree] type #> - [JQ932800.1] seed sequence #> - [14] sequences #> - [4] taxa #> #> $`22` #> Cluster Record [id 22] #> - [subtree] type #> - [DQ321662.1] seed sequence #> - [13] sequences #> - [2] taxa #> #> $`23` #> Cluster Record [id 23] #> - [subtree] type #> - [JQ932874.1] seed sequence #> - [12] sequences #> - [1] taxa #> #> $`24` #> Cluster Record [id 24] #> - [subtree] type #> - [KY508404.1] seed sequence #> - [12] sequences #> - [1] taxa #> #> $`25` #> Cluster Record [id 25] #> - [subtree] type #> - [JQ932840.1] seed sequence #> - [11] sequences #> - [1] taxa #> #> $`26` #> Cluster Record [id 26] #> - [subtree] type #> - [AF107750.1] seed sequence #> - [11] sequences #> - [1] taxa #> #> $`27` #> Cluster Record [id 27] #> - [direct] type #> - [AB761995.1] seed sequence #> - [11] sequences #> - [1] taxa #> #> $`28` #> Cluster Record [id 28] #> - [subtree] type #> - [JQ932868.1] seed sequence #> - [10] sequences #> - [2] taxa #> #> $`29` #> Cluster Record [id 29] #> - [subtree] type #> - [AF338374.1/177..829] seed sequence #> - [10] sequences #> - [8] taxa #> #> $`30` #> Cluster Record [id 30] #> - [subtree] type #> - [LC075890.1] seed sequence #> - [10] sequences #> - [2] taxa #> #> $`31` #> Cluster Record [id 31] #> - [subtree] type #> - [AY972694.1] seed sequence #> - [10] sequences #> - [4] taxa #> #> $`32` #> Cluster Record [id 32] #> - [subtree] type #> - [AY894647.1] seed sequence #> - [10] sequences #> - [1] taxa #> #> $`33` #> Cluster Record [id 33] #> - [subtree] type #> - [JQ932807.1] seed sequence #> - [9] sequences #> - [1] taxa #> #> $`34` #> Cluster Record [id 34] #> - [subtree] type #> - [AF042144.1/11..370] seed sequence #> - [8] sequences #> - [3] taxa #> #> $`35` #> Cluster Record [id 35] #> - [subtree] type #> - [AY900559.1] seed sequence #> - [8] sequences #> - [1] taxa #> #> $`36` #> Cluster Record [id 36] #> - [subtree] type #> - [HM758648.1] seed sequence #> - [8] sequences #> - [6] taxa #> #> $`37` #> Cluster Record [id 37] #> - [subtree] type #> - [JQ932913.1] seed sequence #> - [7] sequences #> - [1] taxa #> #> $`38` #> Cluster Record [id 38] #> - [subtree] type #> - [AY449013.1] seed sequence #> - [7] sequences #> - [1] taxa #> #> $`39` #> Cluster Record [id 39] #> - [subtree] type #> - [AY900538.1] seed sequence #> - [7] sequences #> - [1] taxa #> #> $`40` #> Cluster Record [id 40] #> - [subtree] type #> - [HM759273.1] seed sequence #> - [7] sequences #> - [6] taxa #> #> $`41` #> Cluster Record [id 41] #> - [direct] type #> - [AY449013.1] seed sequence #> - [7] sequences #> - [1] taxa #> #> $`42` #> Cluster Record [id 42] #> - [direct] type #> - [EF658652.1] seed sequence #> - [7] sequences #> - [1] taxa #> #> $`43` #> Cluster Record [id 43] #> - [subtree] type #> - [DQ098867.1] seed sequence #> - [7] sequences #> - [2] taxa #> #> $`44` #> Cluster Record [id 44] #> - [subtree] type #> - [NM_001308532.1/14..457] seed sequence #> - [6] sequences #> - [4] taxa #> #> $`45` #> Cluster Record [id 45] #> - [subtree] type #> - [AY646198.1/152..1576] seed sequence #> - [6] sequences #> - [1] taxa #> #> $`46` #> Cluster Record [id 46] #> - [subtree] type #> - [AF201293.1/23..790] seed sequence #> - [6] sequences #> - [1] taxa #> #> $`47` #> Cluster Record [id 47] #> - [subtree] type #> - [GQ279878.1] seed sequence #> - [6] sequences #> - [4] taxa #> #> $`48` #> Cluster Record [id 48] #> - [subtree] type #> - [KC761051.1] seed sequence #> - [6] sequences #> - [4] taxa #> #> $`49` #> Cluster Record [id 49] #> - [subtree] type #> - [GQ279822.1] seed sequence #> - [6] sequences #> - [4] taxa #> #> $`50` #> Cluster Record [id 50] #> - [subtree] type #> - [HM756838.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`51` #> Cluster Record [id 51] #> - [subtree] type #> - [HM757379.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`52` #> Cluster Record [id 52] #> - [subtree] type #> - [HM757554.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`53` #> Cluster Record [id 53] #> - [subtree] type #> - [HM757720.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`54` #> Cluster Record [id 54] #> - [subtree] type #> - [HM758212.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`55` #> Cluster Record [id 55] #> - [subtree] type #> - [HM758295.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`56` #> Cluster Record [id 56] #> - [subtree] type #> - [HM758463.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`57` #> Cluster Record [id 57] #> - [subtree] type #> - [HM758930.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`58` #> Cluster Record [id 58] #> - [subtree] type #> - [HM759101.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`59` #> Cluster Record [id 59] #> - [subtree] type #> - [HM759370.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`60` #> Cluster Record [id 60] #> - [subtree] type #> - [HM759641.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`61` #> Cluster Record [id 61] #> - [subtree] type #> - [HM759729.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`62` #> Cluster Record [id 62] #> - [subtree] type #> - [HM759894.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`63` #> Cluster Record [id 63] #> - [subtree] type #> - [HM760078.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`64` #> Cluster Record [id 64] #> - [subtree] type #> - [HM760254.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`65` #> Cluster Record [id 65] #> - [subtree] type #> - [HM760525.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`66` #> Cluster Record [id 66] #> - [subtree] type #> - [HM760606.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`67` #> Cluster Record [id 67] #> - [subtree] type #> - [HM761193.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`68` #> Cluster Record [id 68] #> - [subtree] type #> - [HM761505.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`69` #> Cluster Record [id 69] #> - [subtree] type #> - [HM761768.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`70` #> Cluster Record [id 70] #> - [subtree] type #> - [HM761925.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`71` #> Cluster Record [id 71] #> - [subtree] type #> - [HM762092.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`72` #> Cluster Record [id 72] #> - [subtree] type #> - [HM762180.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`73` #> Cluster Record [id 73] #> - [subtree] type #> - [HM762427.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`74` #> Cluster Record [id 74] #> - [subtree] type #> - [HM762765.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`75` #> Cluster Record [id 75] #> - [subtree] type #> - [HM763261.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`76` #> Cluster Record [id 76] #> - [subtree] type #> - [HM763429.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`77` #> Cluster Record [id 77] #> - [subtree] type #> - [HM763727.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`78` #> Cluster Record [id 78] #> - [subtree] type #> - [HM764102.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`79` #> Cluster Record [id 79] #> - [subtree] type #> - [HM764317.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`80` #> Cluster Record [id 80] #> - [subtree] type #> - [HM764901.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`81` #> Cluster Record [id 81] #> - [subtree] type #> - [HM765175.1] seed sequence #> - [6] sequences #> - [6] taxa #> #> $`82` #> Cluster Record [id 82] #> - [subtree] type #> - [GQ279948.1] seed sequence #> - [5] sequences #> - [3] taxa #> #> $`83` #> Cluster Record [id 83] #> - [subtree] type #> - [HM762509.1] seed sequence #> - [5] sequences #> - [5] taxa #> #> $`84` #> Cluster Record [id 84] #> - [subtree] type #> - [HM764645.1] seed sequence #> - [5] sequences #> - [5] taxa #> #> $`85` #> Cluster Record [id 85] #> - [subtree] type #> - [HM764813.1] seed sequence #> - [5] sequences #> - [5] taxa #> #> $`86` #> Cluster Record [id 86] #> - [subtree] type #> - [FJ638414.1] seed sequence #> - [5] sequences #> - [3] taxa #> #> $`87` #> Cluster Record [id 87] #> - [subtree] type #> - [JQ933005.1] seed sequence #> - [5] sequences #> - [1] taxa #> #> $`88` #> Cluster Record [id 88] #> - [subtree] type #> - [JQ932259.1] seed sequence #> - [5] sequences #> - [1] taxa #> #> $`89` #> Cluster Record [id 89] #> - [subtree] type #> - [JQ932280.1] seed sequence #> - [5] sequences #> - [4] taxa #> #> $`90` #> Cluster Record [id 90] #> - [subtree] type #> - [JQ932662.1] seed sequence #> - [5] sequences #> - [4] taxa #> #> $`91` #> Cluster Record [id 91] #> - [subtree] type #> - [JQ932630.1] seed sequence #> - [5] sequences #> - [1] taxa #> #> $`92` #> Cluster Record [id 92] #> - [subtree] type #> - [JQ932880.1] seed sequence #> - [5] sequences #> - [1] taxa #> #> $`93` #> Cluster Record [id 93] #> - [subtree] type #> - [DQ989366.1] seed sequence #> - [5] sequences #> - [5] taxa #> #> $`94` #> Cluster Record [id 94] #> - [subtree] type #> - [FJ623078.1] seed sequence #> - [4] sequences #> - [3] taxa #> #> $`95` #> Cluster Record [id 95] #> - [subtree] type #> - [DQ334827.1] seed sequence #> - [4] sequences #> - [2] taxa #> #> $`96` #> Cluster Record [id 96] #> - [subtree] type #> - [AF042144.1/371..877] seed sequence #> - [4] sequences #> - [2] taxa #> #> $`97` #> Cluster Record [id 97] #> - [subtree] type #> - [AB181217.1/1545..1839] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`98` #> Cluster Record [id 98] #> - [subtree] type #> - [AF397604.1/737..1037] seed sequence #> - [4] sequences #> - [2] taxa #> #> $`99` #> Cluster Record [id 99] #> - [subtree] type #> - [AY449010.1] seed sequence #> - [4] sequences #> - [1] taxa #> #> $`100` #> Cluster Record [id 100] #> - [subtree] type #> - [AY900524.1] seed sequence #> - [4] sequences #> - [1] taxa #> #> $`101` #> Cluster Record [id 101] #> - [subtree] type #> - [AF489244.1/762..1058] seed sequence #> - [4] sequences #> - [2] taxa #> #> $`102` #> Cluster Record [id 102] #> - [subtree] type #> - [AB081280.2] seed sequence #> - [4] sequences #> - [1] taxa #> #> $`103` #> Cluster Record [id 103] #> - [subtree] type #> - [AB081278.2] seed sequence #> - [4] sequences #> - [1] taxa #> #> $`104` #> Cluster Record [id 104] #> - [subtree] type #> - [AB181209.1] seed sequence #> - [4] sequences #> - [1] taxa #> #> $`105` #> Cluster Record [id 105] #> - [subtree] type #> - [HM761011.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`106` #> Cluster Record [id 106] #> - [subtree] type #> - [HM761143.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`107` #> Cluster Record [id 107] #> - [subtree] type #> - [HM762856.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`108` #> Cluster Record [id 108] #> - [subtree] type #> - [HM763019.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`109` #> Cluster Record [id 109] #> - [subtree] type #> - [HM763994.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`110` #> Cluster Record [id 110] #> - [subtree] type #> - [HM764394.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`111` #> Cluster Record [id 111] #> - [subtree] type #> - [KC760417.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`112` #> Cluster Record [id 112] #> - [subtree] type #> - [KC760385.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`113` #> Cluster Record [id 113] #> - [subtree] type #> - [KC760326.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`114` #> Cluster Record [id 114] #> - [subtree] type #> - [KC760263.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`115` #> Cluster Record [id 115] #> - [subtree] type #> - [KC760228.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`116` #> Cluster Record [id 116] #> - [subtree] type #> - [AB239200.1] seed sequence #> - [4] sequences #> - [1] taxa #> #> $`117` #> Cluster Record [id 117] #> - [subtree] type #> - [AF027546.1/1..274] seed sequence #> - [4] sequences #> - [1] taxa #> #> $`118` #> Cluster Record [id 118] #> - [subtree] type #> - [KC762160.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`119` #> Cluster Record [id 119] #> - [subtree] type #> - [KC762072.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`120` #> Cluster Record [id 120] #> - [subtree] type #> - [KC762014.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`121` #> Cluster Record [id 121] #> - [subtree] type #> - [KC761980.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`122` #> Cluster Record [id 122] #> - [subtree] type #> - [KC761951.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`123` #> Cluster Record [id 123] #> - [subtree] type #> - [KC761918.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`124` #> Cluster Record [id 124] #> - [subtree] type #> - [KC761889.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`125` #> Cluster Record [id 125] #> - [subtree] type #> - [KC761833.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`126` #> Cluster Record [id 126] #> - [subtree] type #> - [KC761782.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`127` #> Cluster Record [id 127] #> - [subtree] type #> - [KC761695.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`128` #> Cluster Record [id 128] #> - [subtree] type #> - [KC761632.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`129` #> Cluster Record [id 129] #> - [subtree] type #> - [KC761601.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`130` #> Cluster Record [id 130] #> - [subtree] type #> - [KC761569.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`131` #> Cluster Record [id 131] #> - [subtree] type #> - [KC761504.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`132` #> Cluster Record [id 132] #> - [subtree] type #> - [KC761470.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`133` #> Cluster Record [id 133] #> - [subtree] type #> - [KC761405.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`134` #> Cluster Record [id 134] #> - [subtree] type #> - [KC761242.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`135` #> Cluster Record [id 135] #> - [subtree] type #> - [KC761177.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`136` #> Cluster Record [id 136] #> - [subtree] type #> - [KC761016.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`137` #> Cluster Record [id 137] #> - [subtree] type #> - [KC760988.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`138` #> Cluster Record [id 138] #> - [subtree] type #> - [KC760954.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`139` #> Cluster Record [id 139] #> - [subtree] type #> - [KC760866.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`140` #> Cluster Record [id 140] #> - [subtree] type #> - [KC760833.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`141` #> Cluster Record [id 141] #> - [subtree] type #> - [KC760802.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`142` #> Cluster Record [id 142] #> - [subtree] type #> - [KC760738.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`143` #> Cluster Record [id 143] #> - [subtree] type #> - [KC760712.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`144` #> Cluster Record [id 144] #> - [subtree] type #> - [KC760681.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`145` #> Cluster Record [id 145] #> - [subtree] type #> - [KC760611.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`146` #> Cluster Record [id 146] #> - [subtree] type #> - [KC760514.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`147` #> Cluster Record [id 147] #> - [subtree] type #> - [AF014508.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`148` #> Cluster Record [id 148] #> - [subtree] type #> - [AF014506.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`149` #> Cluster Record [id 149] #> - [subtree] type #> - [AF014509.1] seed sequence #> - [4] sequences #> - [4] taxa #> #> $`150` #> Cluster Record [id 150] #> - [direct] type #> - [AY449010.1] seed sequence #> - [4] sequences #> - [1] taxa #> #> $`151` #> Cluster Record [id 151] #> - [direct] type #> - [DQ098863.1] seed sequence #> - [4] sequences #> - [1] taxa #> #> $`152` #> Cluster Record [id 152] #> - [direct] type #> - [DQ098851.1/1..495] seed sequence #> - [4] sequences #> - [1] taxa #> #> $`153` #> Cluster Record [id 153] #> - [direct] type #> - [LC075890.1] seed sequence #> - [4] sequences #> - [1] taxa #> #> $`154` #> Cluster Record [id 154] #> - [subtree] type #> - [AB081280.2] seed sequence #> - [4] sequences #> - [1] taxa #> #> $`155` #> Cluster Record [id 155] #> - [subtree] type #> - [AB081279.2] seed sequence #> - [4] sequences #> - [1] taxa #> #> $`156` #> Cluster Record [id 156] #> - [subtree] type #> - [AB081278.2] seed sequence #> - [4] sequences #> - [1] taxa #> #> $`157` #> Cluster Record [id 157] #> - [subtree] type #> - [AB181209.1] seed sequence #> - [4] sequences #> - [1] taxa #> #> $`158` #> Cluster Record [id 158] #> - [subtree] type #> - [HM758657.1] seed sequence #> - [4] sequences #> - [2] taxa #> #> $`159` #> Cluster Record [id 159] #> - [subtree] type #> - [AY449065.1] seed sequence #> - [3] sequences #> - [1] taxa #> #> $`160` #> Cluster Record [id 160] #> - [subtree] type #> - [AY449057.1] seed sequence #> - [3] sequences #> - [1] taxa #> #> $`161` #> Cluster Record [id 161] #> - [subtree] type #> - [AY455162.1] seed sequence #> - [3] sequences #> - [1] taxa #> #> $`162` #> Cluster Record [id 162] #> - [subtree] type #> - [AB181208.1/452..749] seed sequence #> - [3] sequences #> - [1] taxa #> #> $`163` #> Cluster Record [id 163] #> - [subtree] type #> - [AB181207.1] seed sequence #> - [3] sequences #> - [1] taxa #> #> $`164` #> Cluster Record [id 164] #> - [subtree] type #> - [AB023937.1] seed sequence #> - [3] sequences #> - [1] taxa #> #> $`165` #> Cluster Record [id 165] #> - [subtree] type #> - [HM756999.1] seed sequence #> - [3] sequences #> - [3] taxa #> #> $`166` #> Cluster Record [id 166] #> - [subtree] type #> - [HM760774.1] seed sequence #> - [3] sequences #> - [3] taxa #> #> $`167` #> Cluster Record [id 167] #> - [subtree] type #> - [HM763503.1] seed sequence #> - [3] sequences #> - [3] taxa #> #> $`168` #> Cluster Record [id 168] #> - [subtree] type #> - [HM763844.1] seed sequence #> - [3] sequences #> - [3] taxa #> #> $`169` #> Cluster Record [id 169] #> - [subtree] type #> - [AB181217.1/324..590] seed sequence #> - [3] sequences #> - [2] taxa #> #> $`170` #> Cluster Record [id 170] #> - [subtree] type #> - [KC760295.1] seed sequence #> - [3] sequences #> - [3] taxa #> #> $`171` #> Cluster Record [id 171] #> - [subtree] type #> - [AB239246.1] seed sequence #> - [3] sequences #> - [1] taxa #> #> $`172` #> Cluster Record [id 172] #> - [subtree] type #> - [AB239226.1] seed sequence #> - [3] sequences #> - [1] taxa #> #> $`173` #> Cluster Record [id 173] #> - [subtree] type #> - [AF486448.1] seed sequence #> - [3] sequences #> - [1] taxa #> #> $`174` #> Cluster Record [id 174] #> - [subtree] type #> - [KM206804.1] seed sequence #> - [3] sequences #> - [3] taxa #> #> $`175` #> Cluster Record [id 175] #> - [subtree] type #> - [KC762127.1] seed sequence #> - [3] sequences #> - [3] taxa #> #> $`176` #> Cluster Record [id 176] #> - [subtree] type #> - [KC762104.1] seed sequence #> - [3] sequences #> - [3] taxa #> #> $`177` #> Cluster Record [id 177] #> - [subtree] type #> - [KC761755.1] seed sequence #> - [3] sequences #> - [3] taxa #> #> $`178` #> Cluster Record [id 178] #> - [subtree] type #> - [KC761438.1] seed sequence #> - [3] sequences #> - [3] taxa #> #> $`179` #> Cluster Record [id 179] #> - [subtree] type #> - [KC761371.1] seed sequence #> - [3] sequences #> - [3] taxa #> #> $`180` #> Cluster Record [id 180] #> - [subtree] type #> - [KC761338.1] seed sequence #> - [3] sequences #> - [3] taxa #> #> $`181` #> Cluster Record [id 181] #> - [subtree] type #> - [KC761277.1] seed sequence #> - [3] sequences #> - [3] taxa #> #> $`182` #> Cluster Record [id 182] #> - [subtree] type #> - [KC761210.1] seed sequence #> - [3] sequences #> - [3] taxa #> #> $`183` #> Cluster Record [id 183] #> - [subtree] type #> - [KC760920.1] seed sequence #> - [3] sequences #> - [3] taxa #> #> $`184` #> Cluster Record [id 184] #> - [subtree] type #> - [KC760770.1] seed sequence #> - [3] sequences #> - [3] taxa #> #> $`185` #> Cluster Record [id 185] #> - [subtree] type #> - [KC760546.1] seed sequence #> - [3] sequences #> - [3] taxa #> #> $`186` #> Cluster Record [id 186] #> - [direct] type #> - [AY449065.1] seed sequence #> - [3] sequences #> - [1] taxa #> #> $`187` #> Cluster Record [id 187] #> - [direct] type #> - [AY449057.1] seed sequence #> - [3] sequences #> - [1] taxa #> #> $`188` #> Cluster Record [id 188] #> - [direct] type #> - [AY455162.1] seed sequence #> - [3] sequences #> - [1] taxa #> #> $`189` #> Cluster Record [id 189] #> - [subtree] type #> - [AB181208.1/452..749] seed sequence #> - [3] sequences #> - [1] taxa #> #> $`190` #> Cluster Record [id 190] #> - [subtree] type #> - [AB181207.1] seed sequence #> - [3] sequences #> - [1] taxa #> #> $`191` #> Cluster Record [id 191] #> - [subtree] type #> - [HM759274.1] seed sequence #> - [3] sequences #> - [2] taxa #> #> $`192` #> Cluster Record [id 192] #> - [subtree] type #> - [AF338376.1/177..829] seed sequence #> - [3] sequences #> - [2] taxa #>
# access cluster records [[ (clstrarc[[clstrarc@ids[[1]]]]) # first cluster record
#> Cluster Record [id 0] #> - [subtree] type #> - [AF129794.1] seed sequence #> - [204] sequences #> - [5] taxa
# generate new cluster archives with [ (clstrarc[clstrarc@ids[1:10]]) # first 10 clusters
#> Archive of cluster record(s) #> - [10] clusters