Function to create a network in cytoscape (https://cytoscape.org/) Cytoscape must be running before executing this function
Usage
cyto_create_graph(
graph_input,
network_name = substitute(graph_input),
collection_name = "default",
style_name = "default",
CPM_table = NULL,
GN_table = NULL
)Arguments
- graph_input
igraph network used to create network in Cytoscape
- network_name
name of the network in Cytoscape, defaults to the name of variable that is the network in R
- collection_name
name of the collection in Cytoscape (default = default)
- style_name
name of the style in Cytoscape (default = default)
- CPM_table
table with the name of the nodes in the first column and the CPM-communities in other columns. This is the result of find_all_cpm_com()
- GN_table
two column table with the name of the nodes in the first column and the Girvan-Newman-communities in other columns
Examples
if (FALSE) {
data(hol_rom)
sim_table_hol <- sim_table(hol_rom)
g_hol <- dendro_network(sim_table_hol)
hol_com_cpm_all <- find_all_cpm_com(g_hol)
g_hol_gn <- gn_names(g_hol)
cyto_create_graph(g_hol, CPM_table = hol_com_cpm_all, GN_table = g_hol_gn)
}