taxize options

taxize options

taxize_options(taxon_state_messages = NULL, ncbi_sleep = NULL, quiet = FALSE)

Arguments

taxon_state_messages

(logical) suppress messages? default: NULL (same as setting FALSE). Set to TRUE to suppress messages, and FALSE to not suppress messages

ncbi_sleep

(numeric/integer) number of seconds to sleep between NCBI ENTREZ http requests. applies to the functions: classification(), comm2sci(), genbank2uid(), get_uid() and ncbi_children(). defaults: 0.334 (without API key) or 0.101 (with API key). minimum value can not be less than 0.101

quiet

(logical) quiet informational output from this function. default: TRUE

Examples

if (FALSE) {
taxize_options()
taxize_options(FALSE)
taxize_options(TRUE)
taxize_options(ncbi_sleep = 0.4)
taxize_options(taxon_state_messages = TRUE, ncbi_sleep = 0.4)
}